Package: coxphf 1.13.4

coxphf: Cox Regression with Firth's Penalized Likelihood

Implements Firth's penalized maximum likelihood bias reduction method for Cox regression which has been shown to provide a solution in case of monotone likelihood (nonconvergence of likelihood function), see Heinze and Schemper (2001) and Heinze and Dunkler (2008). The program fits profile penalized likelihood confidence intervals which were proved to outperform Wald confidence intervals.

Authors:Georg Heinze [aut, cre], Meinhard Ploner [aut], Lena Jiricka [aut], Gregor Steiner [aut]

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coxphf.pdf |coxphf.html✨
coxphf/json (API)

# Install 'coxphf' in R:

install.packages('coxphf', repos = c('https://georgheinze.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/georgheinze/coxphf/issues

Uses libs:

fortran– Runtime library for GNU Fortran applications

Datasets:

breast - Breast Cancer Data Set

On CRAN:

fortran

5.65 score 2 stars 1 packages 36 scripts 2.1k downloads 16 mentions 6 exports 15 dependencies

Last updated 1 years agofrom:6277613757. Checks:7 OK, 4 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 01 2025
R-4.5-win-x86_64	NOTE	Feb 01 2025
R-4.5-mac-x86_64	NOTE	Feb 01 2025
R-4.5-mac-aarch64	NOTE	Feb 01 2025
R-4.5-linux-x86_64	NOTE	Feb 01 2025
R-4.4-win-x86_64	OK	Feb 01 2025
R-4.4-mac-x86_64	OK	Feb 01 2025
R-4.4-mac-aarch64	OK	Feb 01 2025
R-4.3-win-x86_64	OK	Feb 01 2025
R-4.3-mac-x86_64	OK	Feb 01 2025
R-4.3-mac-aarch64	OK	Feb 01 2025

Exports:augment.coxphf coxphf coxphfplot coxphftest glance tidy.coxphf

Dependencies:cli fansi generics glue lattice lifecycle magrittr Matrix pillar pkgconfig rlang survival tibble utf8 vctrs

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Cox Regression with Firth's Penalized Likelihood	coxphf-package _PACKAGE
Augment a coxphf object	augment.coxphf
Breast Cancer Data Set	breast
Cox Regression with Firth's Penalized Likelihood	coxphf
Plot the Penalized Profile Likelhood Function	coxphfplot
Penalized Likelihood Ratio Test in Cox Regression	coxphftest
Glance at a coxphf object	glance.coxphf
Tidy a coxphf object	tidy.coxphf